PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G24040.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 321aa    MW: 36436.8 Da    PI: 8.9348
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G24040.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  ORUFI08G24040.4  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                     79***********************************************96 PP

2K-box72.41.4e-247014326100
            K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      k+++++++  R+llGedL+sL +keL++Le+qL++slk++R++++++l++ + elq++e++++e+n++Lr+klee
  ORUFI08G24040.4  70 KQLSKIEK-VRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDRLTELQRREQMVSEANRCLRRKLEE 143
                      34455555.5**************************************************************987 PP

3K-box38.26.1e-141932263669
            K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                       +llGedL+sL +keL++Le+qL++slk++R+++
  ORUFI08G24040.4 193 GNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTR 226
                      49*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.389161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-30279IPR002100Transcription factor, MADS-box
CDDcd002651.66E-38265No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-32323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.29555147IPR002487Transcription factor, K-box
PfamPF014861.1E-1777141IPR002487Transcription factor, K-box
PROSITE profilePS512976.781171279IPR002487Transcription factor, K-box
PfamPF014861.4E-9194234IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
QRNAVTQDPK QLSKIEKVRN LLGEDLDSLG IKELESLEKQ LDSSLKHVRT TRTKHLVDRL  120
TELQRREQMV SEANRCLRRK LEESNHVRGQ QVWEQGCNLI GYERQPEVQQ PLHGGNGFFH  180
PLDAAGEPTL QIGNLLGEDL DSLGIKELES LEKQLDSSLK HVRTTRWILN SDETSRRPRS  240
PATLPPPVPT PLHDRAAAQQ QQQQLARRGD GEMEMVPLLL LPSTTFLFFE NGFPHHHIII  300
LASSTVLALL LVVLVLSSSP F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_D8e-19265164Myocyte-specific enhancer factor 2A
3mu6_C8e-19265164Myocyte-specific enhancer factor 2A
3mu6_B8e-19265164Myocyte-specific enhancer factor 2A
3mu6_A8e-19265164Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002630.0AK100263.1 Oryza sativa Japonica Group cDNA clone:J023063L04, full insert sequence.
GenBankAY5519210.0AY551921.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS216 mRNA, complete cds.
GenBankFJ7509340.0FJ750934.1 Oryza sativa clone KCS054B01 MADS-box transcription factor 7 mRNA, complete cds.
GenBankOSU319940.0U31994.1 Oryza sativa MADS box protein OsMADS45 mRNA, complete cds.
GenBankOSU788910.0U78891.2 Oryza sativa MADS box protein (MADS7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648762.11e-118PREDICTED: MADS-box transcription factor 7 isoform X2
SwissprotP0C5B01e-120MADS7_ORYSI; MADS-box transcription factor 7
SwissprotQ0J4661e-120MADS7_ORYSJ; MADS-box transcription factor 7
TrEMBLA0A0E0QLM20.0A0A0E0QLM2_ORYRU; Uncharacterized protein
STRINGBGIOSGA029052-PA1e-117(Oryza sativa Indica Group)
STRINGORGLA08G0230000.11e-117(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.17e-60MIKC_MADS family protein